高原習服及習服不良過程中基因表達特征及其病理生理學意義研究
[Abstract]:BACKGROUND: The plateau area is characterized by hypoxia, low pressure, cold, low relative humidity and strong solar radiation. The most significant factors affecting human life activities are hypoxia. High altitude acclimatization is a time-dependent gradual process in which the body acclimatizes to the high altitude hypoxic environment. At different stages of altitude hypoxic exposure, the body acclimatizes to different advantages, indicating different acclimatization stages. The underlying mechanism and molecular basis may be different. Most people can acquire a good adaptation to the high altitude environment by acclimation, but some people develop various acute and chronic high altitude diseases due to poor acclimation to the high altitude environment. Acute high altitude diseases include acute mountain sickness (AMS), high altitude pulmonary edema and high altitude brain edema, including AMS. AMS is the most common disease among people who enter the plateau rapidly. The median incidence of AMS is as high as 60% among people who enter the plateau rapidly without preventive measures. AMS patients often lose their normal working ability. If severe AMS patients are not treated in time, they will easily develop into high altitude brain edema, which directly threatens the lives of patients. AMS has become a healthy life for people who enter the plateau rapidly. Chronic plateau diseases include high altitude polycythemia (HAPC) and high altitude pulmonary hypertension, of which HAPC is the most common chronic plateau disease in people living at high altitudes, characterized by excessive erythrocyte hyperplasia and marked increase in hemoglobin concentration, resulting in excessive red blood cell hyperplasia leading to blood pressure. High viscosity, microcirculation disturbance, and further aggravation of tissue hypoxia, patients are prone to multiple organs of the body, system damage and thrombosis and other serious complications, seriously affecting the health and safety of patients. Morphological changes have to be readjusted to fit the plain environment, a process known as acclimatization, in which some individuals exhibit a range of clinical symptoms such as drowsiness, loss of responsiveness and memory. Physiological, biochemical and morphological studies on altitude acclimatization have enriched people's understanding of altitude acclimatization, but the molecular mechanism of altitude acclimatization is still unclear and lack of systematic research.Previous studies on the pathogenesis of AMS and HAPC have shown that the occurrence of AMS and HAPC is a large number of genes, as well as genes and altitude lows. Gene expression changes are the core of transcriptome research. Cell transcriptome is space-time specific and changes with time and space. Therefore, gene expression changes are the maintenance of homeostasis and self-change of cells. The analysis of gene expression is an important means to study the molecular mechanism of complex phenotypes, and the data of gene expression rich in biological information produced by transcriptome provide a possibility for the systematic study of the molecular basis of complex phenotypes. In the first part, a continuous dynamic observation was carried out on the Han population before entering the plateau, early, middle, late, and early and late return to the plain. RNA-Seq technique was used to detect gene expression in whole blood cells, and WGCNA algorithm was used to find the specific expression genes at different time stages. The pathophysiological significance of gene annotation database and literature were studied to understand the essence of altitude acclimation. Part 2: Comparing AMS and HAPC patients with and without altitude hypoxia exposure. The co-expression patterns and key genes related to the occurrence of AMS and HAPC were studied from the network level, providing important clues for the study of the pathogenesis of altitude sickness. Methods: 1. Two independent population studies were conducted. The results were as follows: (1) Blood pressure, heart rate and oxygen saturation were dynamically observed in 16 healthy male Han volunteers before entering the plateau, at the early (3d), middle (4m), late (1y) and early (1m) and late (6m) after returning to the plateau, and venous blood was collected for RNA-Seq sequencing, hemoglobin concentration detection and plasma cytokines detection. (2) Blood samples were collected from 109 healthy male Han volunteers before they entered the plateau. Plasma samples were separated for microRNA expression profiling. The incidence and symptom score of AMS were observed and recorded after they entered the plateau (3658m). Total RNA of whole blood cells was extracted and the PE sequencing library was constructed. RNA-Seq was sequenced by Illumina HiSeq 2000. The quality of original RNA-Seq sequence data was assessed by BGI standard data processing flow and compared with human reference genome (hg19); the gene expression values were standardized and quantified by FPKM value; the differentially expressed genes between groups were analyzed by R software package edgeR, and the | Fold change | 2 and FDR | 0.05 were taken as thresholds; the gene expression was systematically analyzed by WGCNA algorithm. According to the similarity of gene expression, we divided the gene modules into early, middle, late and return to the plain, and constructed their co-expression networks according to the degree of gene association; using cluster Profiler software package and on-line analysis tool REVIGO to biologically analyze the stage-specific genes. Notes: Biological functions of key genes in the network were discussed in detail with the reported literature. 4. RPKM was used to standardize and quantify the transcripts of AMS patients and non-AMS patients; density-based pruning algorithm was used to screen differentially expressed transcripts of AMS patients and non-AMS patients before and after acute plateau entry; and Gene Functional Clas in DAVID was used. The sification tool was used to annotate and classify the differentially expressed transcripts; the topological coincidence matrix OT (i, j) of AMS patients and non-AMS patients was calculated according to clustering network theory, and the topological structure of the gene co-expression network was constructed and compared. 5. The plasma IL 10, CCL8 and IL in AMS patients and non-AMS patients were analyzed by ELISA. Serum microRNA expression profiles of healthy male Han volunteers before entering the plateau were detected by using microRNAs microRNA expression profiles; differentially expressed microRNAs were validated by qRT-PCR and were detected by R software package Optimal Cutpoints in AMS. Evaluation of predictive efficacy in disease risk. 7. MicroRNA regulatory target genes were analyzed using microT-CDS and TarBase tools; microRNA target genes were biologically annotated using DIANA-MicroPath. Old change | 2 and FDR < 0.05 were used as thresholds; the association genes between HAPC patients and non-HAPC patients were biologically annotated by cluster Profiler software package and on-line analysis tool REVIGO; the co-expression networks of differentially up-regulated genes between HAPC patients and non-HAPC patients were constructed by Spearman correlation coefficient method; and the concentric was used for HAPC patients. Results: 1. In the early stage of Plateau entry, genes involved in dopamine metabolism, ion transport and hemoglobin synthesis were specifically expressed. Genes MXI1, RNF10, TRIM58, GLRX5 and BPGM were at the center of the co-expression network. The gene expression pattern was similar to that before entering the plateau; at the later stage, the genes involved in phosphorus metabolism, immune system and MAPK signaling pathway, endocytosis and vesicle transport were specifically expressed, and SMARCD2, CDK9 and RIC8A were at the center of the co-expression network. 2. Back to the early plain, the genes involved in macromolecular substances, nucleic acid metabolism, cell proliferation and differentiation. Because of specific expression, genes MTF2, ZFR, CAND1, DEPDC1, DEPDC1B, CCNA2, CDC6, CDC20, CCNB2, CCNB1 and ANLN are at the center of the co-expression network; genes ZBP1, STAT2, IFIT1, IFIT2 and IFIT3 are at the center of the co-expression network in the late stage of immune inflammation, compared with those without AMS. The response was significantly enriched in the differentially expressed transcripts of AMS patients (enrichment fraction: 3.44, 3.27); the degree of IL 10, CCL8 and IL 17F in the gene co-expression network of AMS patients and non-AMS patients was significantly different; at protein level, the expression of IL 10 in AMS patients was significantly down-regulated, CCL8 and IL 17F were significantly increased, IL 10 was significantly up-regulated in non-AMS patients, and IL 17F was significantly up-regulated in AMS patients at high altitude. There was no significant difference in CCL8, and in another group, IL-10 protein was significantly decreased in AMS patients (p = 0.001) after acute high altitude entry, and no significant change was found in non-AMS patients. There was a strong correlation between the change of IL-10 and the individual clinical symptom score of acute high altitude entry, R (22) = - 0.52, P = 0.013.4. The expression levels of 9b-3p and microwave-136-3p were significantly higher than those of non-patients; Logistic regression model showed that the sensitivity and specificity of the combination of microwave-369-3p, microwave-449b-3p and microwave-136-3p to the risk prediction of AMS were 92.68% and 93.48%, AUC: 0.986, 95% CI: 0.970-1.000, p0.001, LR +: 14.21, LR - - 0.08; Bioinformatics analysis indicated that the combination of microwave-369-3p, microwave-449-3b, and microwave-449b-3p was sensitive and specific to the risk prediction of AMS. The target genes regulated by MIR-136-3p and MIR-136-3p are mainly involved in the metabolic process of nitrogen compounds and the signaling pathway of neurotrophic factor TRK receptor. The mean value was 22.64, twice as high as that of non-HAPC patients (11.85). In the co-expression network of differentially up-regulated genes in HAPC patients, the genes with higher centrality were IFT2 0 and MRPL22, respectively, 0.50 and 0.46. In non-HAPC patients, the genes with higher centrality were ITGAV and TPRKB, respectively, 0.50 and 0.37. Conclusion: 1. In the early stage of Plateau entry, the organisms with MXI1, R, and TPRKB had higher centrality. NF10, TRIM58, GLRX5 and BPGM are the core expression genes, which regulate dopamine metabolism, ion transport and hemoglobin synthesis. It is suggested that in the early stage of altitude acclimation, the organism adapts to altitude environment mainly by increasing oxygen intake, transport and oxygen release efficiency of oxyhemoglobin, so as to achieve the basic balance between the internal and external environment. With prolonged exposure time, the body mobilizes more internal mechanisms to participate in the regulation of homeostasis of the internal environment, in which SMARCD2, CDK9 and RIC8A are the core expression genes. These genes are involved in phosphorus metabolism, immune system and MAPK signal pathway regulation, endocytosis and vesicle transport genes, promote red blood cell proliferation and oxygen transport, promote Tissue angiogenesis shortens the diffusion distance of oxygen and enhances the utilization of oxygen by tissue cells. During this process, the immune system is activated, which may be of significance in preventing hypoxic injury and ensuring the stability of the body. 2. In the early stage of returning to the plain from the plateau, the body uses MTF2, DEPDC1, DEPDC1B, CCNA2, CDC6, CDC20. CCNB2, CCNB1 and ANLN are the core expression genes, which regulate cell proliferation and differentiation to establish internal environment balance; ZBP1, STAT2 and IFIT family are the core expression genes in the late stage, participate in and enhance immune inflammation, remove endogenous injury factors and repair damaged tissues. 3. Increased inflammation is an important mechanism of AMS. Oxygen induces alterations in gene co-expression patterns in AMS patients, resulting in decreased secretion of anti-inflammatory factors IL10 and increased secretion of pro-inflammatory cytokines CCL8 and IL17F.
【學位授予單位】:第三軍醫(yī)大學
【學位級別】:博士
【學位授予年份】:2017
【分類號】:R594.3
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