肺炎衣原體核糖核酸酶H的功能研究
[Abstract]:The RNase H (RNase H) is capable of specifically hydrolyzing the RNA/ DNA hybrid double-stranded or DNA-RNA-DNA/ DNA chimeric substrate. According to the amino acid sequence and spatial structure similarity, the RNase H is divided into two types: type 1 and type 2. Wherein, the type 1 RNaseH comprises the RNase HI of the bacterium and the RNase H1 of the eukaryote; the type 2 RNase H comprises the bacterial RNase HII, the RNase HIII, the archaea RNase HII and the eukaryote RNase H2. RNase HII/ H2 is widely present in various organisms, but RNase HI/ H1 and HIII remain only in some organisms It is generally accepted that RNase HI/ H1 and HIII can only cut DNA-(rN) n-DNA/ DNA double-stranded (n-4) or RNA/ DNA hybrid chain substrate containing four (or more) ribose nucleic acid, while RNase HII/ H2 can not only cut these substrates, but also cut DNA-rN _ 1-DNA/ DNA (rN _ 1, single ribose nucleic acid) bis The complete sequence analysis of the genome showed that the Chlamydia pneumoniae did not have RNase HI, only two of the two types of RNase H: CpRNase HII and CpRNase HIII, respectively, were based on CP0654 and CP0782 (NCBI serial number). For coding. In-vitro biochemical studies in the early stage confirmed that the purified CpRNase HII protein can cut the DNA-rN _ 1-DNA/ DNA substrate; and CpRNase HIII can cut the RNA/ DN A substrate. The present study found that CpRNase HIII can also cut DNA-rN _ 1-DNA/ DN in the presence of manganese ions (Mn ~ (2 +)) A substrate. This is the first time in the RNase H domain. The RNase HIII has the cleavage DNA-rN _ 1-DNA/ DNA substrate The ability of the two CpRNase H to cut the DNA-rN_1-DNA/ DNA substrate was different when the two CpRNase H cut the DNA-rN_1-DNA/ DNA substrate, and the CpRNase HIII was dependent on Mn ~ (2 +), while the CpRNase HII preferred the magnesium ion (Mg2 +) and the activity was affected by Mn ~ (2 +). 2 +) inhibition. Further studies have shown that, in the cleavage of DNA-rN _ 1-DNA/ DNA substrate, the two enzymes are separated from the magnesium and manganese in the reaction system. On the other hand, the enzyme activity is not affected by the fluctuation of magnesium-manganese ions when two CpRNase H cuts other substrates (the substrate of the RNA/ DNA hybrid chain and the similar Okazaki fragment). These results indicate that a change in the level of magnesium-manganese ions would inhibit the activity of a CpRNase H-cut DNA-rN _ 1-DNA/ DNA substrate, but also activate another CpRNas e H. In the bacterial body, we also confirmed the above The results of in vitro experiments were as follows: The gene recombination technique was used to construct the rnh mutant of Sanzhu. The transformation of the gene was as follows: LZ1[DY329,[rnhA, rnhB:: CprnhB], LZ2[DY329, and rnhA:: CprnhC, rnhB:: CprnhB], LZ3[DY329]: Cprnh: Cprnh C. rnhB], where CprnhB and Cprnhc represent the coding genes of two CpRNase H (HII and HIII), respectively; and rnhA and rnhB represent E. coli RNase HI and H, respectively. The addition of 0.2 mM Mn to (2 +) in the culture medium inhibited the function of the CpRNase HII, resulting in a slow growth of the bacteria; on the contrary, the deletion of the RNase H in the E.coli was dependent on the CpRNase HIII. The analysis of the alkali sensitivity of the genome of the mutant strain of E. coli found that when the activity of the CpRNase H was inhibited and the growth of the bacteria was retarded, its genome was very sensitive to the base, indicating that the genome was incorporated. Large amount of ribose nucleic acid. Considering in vitro experiments that the CpRNase H enzyme digestion RNA/ DNA hybrid chain is confirmed, the substrate with similar Okazaki fragment is not affected by the fluctuation of the magnesium-manganese ions in the buffer solution, the main reason for the growth retardation of the mutant strain is the in vivo CpRNase H cleavage DNA-rN_1-DNA/ DNA substrate, The activity is inhibited, leading to the incorporation of too much of a single ribose nucleic acid in the genome; while adding corresponding preferred metal ions in the growth medium will restore the activity of CpRNase H to make the mutation The addition of manganese ions in the culture medium affected the activity of CpRNase H in the bacteria. The results suggested that the manganese concentration in the bacteria was changed when the manganese was added to the culture medium, and we provided it. This was confirmed by the relevant data. The three strains of E. coli were cultured using a medium containing or without manganese, and measured by plasma emission spectroscopy (ICP-AES). The results showed that the concentration of manganese ion in the cell was increased by 5-14 times compared with that of the culture of the manganese-containing medium, and the activity of the intracellular RNase H was significantly affected, that is to promote the activity of CpRNase HIII and to inhibit the CpR. Nase HII activity. In addition, in order to verify that the added manganese in the medium will affect the expression of the CpRNase H-encoding gene, we choose to grow a mutant strain that is different in the presence of manganese and manganese and to extract its total RNA Real-time quantitative PCR was carried out. The relative quantitative analysis was carried out using the housekeeping gene gapA as the internal reference gene, and the results showed that the expression of the gene was not significantly different from the addition or absence of manganese in the culture medium, indicating that the manganese in the culture medium affected the growth of the mutant strain because of CpRNas. The activity of e H is inhibited, not CpRNase H The expression of the coding gene is blocked. The results of these experiments show that the two kinds of CpRNase H are the relationship of mutual assistance in the body: in the normal case, the function of CpRNase HII is performed to remove the single ribose nucleic acid which is incorporated in the genome, while in the condition of the ion fluctuation If, for example, the manganese content is high, the activity of CpRNase HII is inhibited and the activity of CpRNase HII is inhibited by CpRNase. The same function is exercised by HIII. Two types of RNase H are used by Chlamydia pneumoniae because of their complex living environment, and the two species of CpRNase H can be co-operative and complementary in a complex and changeable environment. The cell can maintain normal physiological metabolism. After confirming that CpRNase HIII also has the activity of the enzyme-cut DNA-rN _ 1-DNA/ DNA substrate, we further studied CpRNase HIII. The structure of this kind of substrate is not cut, and the importance of the substrate is identified by the in vitro biochemical measurement, the amino acid of the mutation is identified and the protein is cut, the importance of the substrate is identified, and the identification of the DNA-rN _ 1 by the CpRNase HIII is clarified by means of computer-aided methods such as the homologous mode construction, the molecular docking and the molecular dynamics simulation. -The mechanism of the DNA/ DNA substrate. The "GKG" motif of the CpRNase HIII was responsible for the identification of a single ribose nucleic acid, similar to the "GR (K) G" motif in the RNase HII, indicating that CpRNase HIII was adopted The substrate recognition mechanism similar to HII. The RNase HII/ H2 recognizes that the ribose nucleic acid also requires a highly conserved tyrosine (Y), but by analyzing the protein structure model obtained by the amino acid sequence and the homologous model, it is found that in the case of CpRNase HIII, There was no such Y residue in position, and by molecular dynamics simulation we found that the 94-bit serine (Ser94) of the CpRNase HIII and the deoxyribose nucleic acid 3--terminal of the DNA-rN _ 1-DNA/ DNA substrate form a stable hydrogen bond, and the deoxyribose core The acid is dragged by the acid of the ribose nucleic acid, while the DNA is allowed to The local conformation of the double helix has changed. This action appears to have performed the function of tyrosine in the RNase HII, and the aid of the "GKG" motif is accurate. In the guidance of the molecular simulation results, we carried out a series of biochemical experiments around Ser94 to prove that The importance of the Ser to the activity of the enzyme is given. The results of this study illustrate the CpRNa
【學(xué)位授予單位】:上海交通大學(xué)
【學(xué)位級(jí)別】:博士
【學(xué)位授予年份】:2012
【分類(lèi)號(hào)】:R374
【相似文獻(xiàn)】
相關(guān)期刊論文 前10條
1 蘇明權(quán),穆士杰,馬越云,于文彬,丁振若;聚合酶鏈反應(yīng)檢測(cè)肺炎衣原體方法的建立與初步應(yīng)用[J];中華醫(yī)學(xué)檢驗(yàn)雜志;1997年04期
2 劉鋼,楊永弘,江載芳;肺炎衣原體研究現(xiàn)狀[J];中華兒科雜志;2001年08期
3 章黎蘋(píng),黃元偉,朱建華;肺炎衣原體的培養(yǎng)及對(duì)人臍帶靜脈內(nèi)皮細(xì)胞的感染[J];科技通報(bào);2002年02期
4 朱瑾;肺炎衣原體診斷學(xué)研究進(jìn)展[J];國(guó)外醫(yī)學(xué).臨床生物化學(xué)與檢驗(yàn)學(xué)分冊(cè);1997年04期
5 朱瑾;;肺炎衣原體超微結(jié)構(gòu)的研究進(jìn)展[J];國(guó)外醫(yī)學(xué)(微生物學(xué)分冊(cè));1998年03期
6 戢新平,李麗云;肺炎衣原體的生物學(xué)特性與臨床[J];微生物學(xué)通報(bào);1998年01期
7 饒賢才,胡福泉,俞樹(shù)榮;重慶地區(qū)肺炎衣原體感染株的部分基因分析[J];中國(guó)人獸共患病雜志;2001年06期
8 施毅,夏錫榮,宋勇,康曉明,馮根寶,胡蘭萍;痰和咽拭子PCR及血清學(xué)聯(lián)合檢測(cè)肺炎衣原體急性呼吸道感染[J];南京大學(xué)學(xué)報(bào)(自然科學(xué)版);1998年05期
9 GeoffreyCowley,季敏;肺炎衣原體是心臟病和中風(fēng)的罪魁禍?zhǔn)讍?[J];世界科學(xué);1997年11期
10 牛玉宏,董峰,史劍慧,葛均波;肺炎衣原體蛋白酶樣活性因子在急性感染期的表達(dá)和分泌[J];中華微生物學(xué)和免疫學(xué)雜志;2004年04期
相關(guān)會(huì)議論文 前10條
1 劉卉;;肺炎衣原體與腦梗死關(guān)系的研究[A];第十一屆全國(guó)神經(jīng)病學(xué)學(xué)術(shù)會(huì)議論文匯編[C];2008年
2 陸小梅;;肺炎衣原體血清學(xué)檢測(cè)及臨床價(jià)值[A];第6次全國(guó)微生物學(xué)與免疫學(xué)大會(huì)論文摘要匯編[C];2004年
3 秦玲;;肺炎衣原體套式PCR檢測(cè)及其臨床意義(摘要)[A];中華醫(yī)學(xué)會(huì)第六屆全國(guó)結(jié)核病學(xué)術(shù)大會(huì)論文匯編[C];2000年
4 儲(chǔ)德節(jié);胡志雄;余竹元;都勇;郭水根;潘春峰;王靜;周海英;;建立動(dòng)物模型探討肺炎衣原體致肺癌作用的研究[A];中華醫(yī)學(xué)會(huì)呼吸病學(xué)年會(huì)——2011(第十二次全國(guó)呼吸病學(xué)學(xué)術(shù)會(huì)議)論文匯編[C];2011年
5 倪安平;崔京濤;汪曉巍;;4種國(guó)產(chǎn)大環(huán)內(nèi)酯類(lèi)抗菌藥物體外抗沙眼衣原體和肺炎衣原體作用的研究[A];中華醫(yī)學(xué)會(huì)第七次全國(guó)檢驗(yàn)醫(yī)學(xué)學(xué)術(shù)會(huì)議資料匯編[C];2008年
6 糜祖煌;秦玲;;肺炎衣原體套式PCR檢測(cè)及其臨床意義[A];第五屆全國(guó)優(yōu)生科學(xué)大會(huì)論文匯編[C];2000年
7 蘇世斌;林勤益;郭浩然;;臺(tái)灣成年人肺炎衣原體和新陳代謝癥候群之相關(guān)研究[A];第七屆海峽兩岸心血管科學(xué)研討會(huì)論文集[C];2009年
8 楊玲;吳移謀;周洲;鄧仲良;劉R
本文編號(hào):2500250
本文鏈接:http://sikaile.net/xiyixuelunwen/2500250.html