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甘藍(lán)型油菜“丙409”光周期敏感性QTLs定位及轉(zhuǎn)錄組分析

發(fā)布時(shí)間:2018-05-28 07:49

  本文選題:甘藍(lán)型油菜 + 廣適性; 參考:《華中農(nóng)業(yè)大學(xué)》2017年碩士論文


【摘要】:光周期對(duì)植物的生長(zhǎng)發(fā)育有著重要的影響,油菜是長(zhǎng)日照植物,尋找具有廣適應(yīng)性的油菜品種,有利于甘藍(lán)型油菜的種質(zhì)資源的創(chuàng)新,提高甘藍(lán)型油菜對(duì)不同播種季節(jié)和地理緯度的適應(yīng)性,對(duì)油菜的遺傳改良和品種選育有著重要的意義。本研究以對(duì)光周期敏感的丙409和對(duì)光周期不敏感的中雙8號(hào)為親本構(gòu)建的包含有150個(gè)株系的DH群體為材料,利用DH群體的遺傳連鎖圖譜,采用復(fù)合區(qū)間作圖法,通過(guò)3年多點(diǎn)的不同光周期試驗(yàn),對(duì)開(kāi)花時(shí)間進(jìn)行QTL定位和效應(yīng)分析。同時(shí)在氣候箱里對(duì)親本進(jìn)行不同的光周期處理(16h/8h,12h/12h),長(zhǎng)到一個(gè)月時(shí)從光照開(kāi)始的時(shí)間開(kāi)始取樣,每隔4個(gè)小時(shí)取一次樣,取樣時(shí)間為0h(光照開(kāi)始時(shí)),4h,8h,12h,16h,20h,24h。取葉片提RNA,兩個(gè)重復(fù),進(jìn)行RNA-seq,找到控制花期的差異基因。主要研究結(jié)果如下:1.DH群體在6個(gè)環(huán)境下的開(kāi)花期QTL信息DH群體在4個(gè)地點(diǎn)(武漢,和政,烏魯木齊,韶關(guān))共6個(gè)環(huán)境(3年*1點(diǎn)+1年*3點(diǎn))下調(diào)查開(kāi)花期,共檢測(cè)到11個(gè)與初花期有關(guān)的QTL,其中在6個(gè)環(huán)境中都檢測(cè)到了C8染色體上的同一個(gè)QTL,平均解釋了表型變異的11.31%;在E1,E2,E3,E6環(huán)境下都檢測(cè)到在A(yíng)3染色體上的同一個(gè)QTL,平均解釋了表型變異的7.89%;在E1,E3,E5,E6環(huán)境下都檢測(cè)到了在A(yíng)2染色體同一個(gè)QTL,解釋了表型變異的10.32%。只在一個(gè)地點(diǎn)檢測(cè)到QTL有7個(gè)。2.光周期敏感性的分析對(duì)不同地點(diǎn)的開(kāi)花期做了光周期敏感性分析,共檢測(cè)到11個(gè)和光周期敏感性相關(guān)的位點(diǎn)。其中在E1-E6,E2-E6,E3-E6,E3-E4,E4-E6,E5-E6都檢測(cè)到了在A(yíng)2染色體上的同一個(gè)QTL位點(diǎn),平均解釋了表型變異的12.59%;在E1-E6,E2-E5,E2-E6,E3-E6,E4-E5,E4-E6都檢測(cè)到了在C8染色體上的同一個(gè)QTL位點(diǎn),平均解釋表型變異的17%;在E1-E6,E2-E4,E2-E6環(huán)境下都檢測(cè)到了A3染色體上的QTL位點(diǎn),平均解釋了表型變異的5.12%。只在兩個(gè)環(huán)境比對(duì)下檢測(cè)到的QTL有5個(gè)。3.甘藍(lán)型油菜在不同光周期下的轉(zhuǎn)錄組分析在相同光周期下的相同時(shí)間點(diǎn)對(duì)丙409和中雙8號(hào)的相對(duì)表達(dá)進(jìn)行分析,發(fā)現(xiàn)16h光周期條件下24h時(shí)的差異表達(dá)基因最多,為19965個(gè);在12個(gè)小時(shí)光照下T12差異表達(dá)基因最多,為18859個(gè)。比較了丙409和中雙8號(hào)分別在16h與12h光周期相比在相同時(shí)間點(diǎn)DEG的表達(dá)情況,發(fā)現(xiàn)丙409在24h的時(shí)候差異表達(dá)基因最多,為20396個(gè);中雙8號(hào)在16h時(shí)差異表達(dá)基因最多為20237個(gè)。在光周期的臨界點(diǎn)基因上調(diào)下調(diào)表達(dá)比較多。4.候選基因的分析QTL結(jié)果結(jié)合轉(zhuǎn)錄組數(shù)據(jù)找到A2,A3,C8染色體上在區(qū)段內(nèi)的差異表達(dá)基因,有676個(gè)。沒(méi)有發(fā)現(xiàn)和開(kāi)花相關(guān)的基因,這些基因在KEGG分析中,淀粉和蔗糖代謝,嘌呤的代謝所包含的基因較多。
[Abstract]:Photoperiod has an important effect on the growth and development of plants. Rape is a long sunshine plant. It is beneficial to the innovation of germplasm resources of Brassica napus to search for a variety of rapeseed with wide adaptability. It is of great significance to improve the adaptability of Brassica napus to different sowing seasons and geographical latitudes, and to improve the genetics and breeding of Brassica napus. In this study, a DH population containing 150 lines was constructed from Pro409, which was sensitive to photoperiod, and Zhongshuang 8, which was insensitive to photoperiod. The genetic linkage map of DH population was used to make use of compound interval mapping method. QTL location and effect analysis of flowering time were carried out through different photoperiod experiments of more than 3 years. At the same time, the parents were treated with different photoperiod at 16 h / 8 h / 12 h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h / 12h, respectively in the climate box. The RNAs were extracted from the leaves and two repeats were carried out to find the differentially expressed genes controlling the flowering period. The main results were as follows: 1. The QTL information of DH population in 6 environments was investigated in 4 locations (Wuhan, Hezheng, Urumqi, Shaoguan) in 6 environments (3 points at 1: 1 in 3 years), and the flowering period of DH population was investigated in 4 locations (Wuhan, Hezheng, Urumqi, Shaoguan). A total of 11 QTLs related to early flowering were detected, of which the same QTLs on the C8 chromosome were detected in 6 environments, which accounted for the average phenotypic variation of 11.31 cells, and the same QTLs on the A3 chromosome were detected in the E1E2E3E6 environment. 7.89% of phenotypic variation was explained, and the same QTL on A2 chromosome was detected in E1E3 and E5 / E6 environment, which explained 10.32% of phenotypic variation. There are only 7. 2. 2 QTL detected in one site. The photoperiod sensitivity analysis was carried out for the flowering period of different locations, and a total of 11 sites related to photoperiod sensitivity were detected. Among them, the same QTL locus on the A2 chromosome was detected in E1-E6E2-E6-E6-E6-E3-E4E4-E6-E5-E6, and the same QTL locus on the C8 chromosome was detected in the E1-E6E2-E2-E5 E2-E2-E6-E6E3-E6E4-E5E4-E6 locus on the chromosomes A2, and in the E1-E6E6E2-E5-E5, E1-E6E6E2-E2-E2-E6E3-E6E4-E5E4-E6, respectively. The QTL loci on the A3 chromosome were detected in E1-E6 E2-E4E2-E6 environment, and the average explained phenotypic variation was 5.12%. There were only 5. 3. 3 QTL detected in two environments. Transcriptome analysis of Brassica napus under different photoperiod at the same time point under the same photoperiod, the relative expressions of Pro409 and Zhongshuang 8 were analyzed. The results showed that the most differentially expressed genes were at 16 h photoperiod for 24 h (19965). The number of differentially expressed genes was 18859 under 12 hours of illumination. The expression of DEG at 16 h and 12 h photoperiod was compared between P409 and Zhongshuang 8, respectively. It was found that the highest number of differentially expressed genes was 20396 at 24h, and 20237 at 16h in Zhongshuang8. At the critical point of photoperiod, the up-regulation and down-regulation of genes are more. 4. The results of QTL analysis and transcriptome data showed that there were 676 differentially expressed genes in the region of A2A3C8 chromosome. No genes related to flowering were found. In KEGG analysis, the metabolism of starch, sucrose and purine contained more genes.
【學(xué)位授予單位】:華中農(nóng)業(yè)大學(xué)
【學(xué)位級(jí)別】:碩士
【學(xué)位授予年份】:2017
【分類(lèi)號(hào)】:S565.4

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