KIR 3DL3基因cDNA分子克隆測(cè)序法鑒定1個(gè)常見型新等位基因
發(fā)布時(shí)間:2018-06-18 10:08
本文選題:KIRDL基因 + cDNA; 參考:《中國(guó)輸血雜志》2017年10期
【摘要】:目的建立KIR3DL3基因c DNA分子克隆測(cè)序方法,鑒定在南方漢族人群中新發(fā)現(xiàn)的1個(gè)KIR3DL3等位基因。方法對(duì)1例KIR3DL3基因測(cè)序分型結(jié)果異常的標(biāo)本,采集EDTA抗凝新鮮外周血樣,提取mRNA,反轉(zhuǎn)錄成c DNA后,采用1對(duì)KIR3DL3基因特異性PCR引物對(duì)全部編碼區(qū)序列做PCR擴(kuò)增,擴(kuò)增產(chǎn)物經(jīng)切膠回收純化后,做分子克隆和單體型測(cè)序。結(jié)果經(jīng)分子克隆和測(cè)序,檢出1個(gè)正常的KIR3DL3*01002等位基因和1個(gè)新變異的KIR3DL3等位基因,該新等位基因的序列與KIR3DL3*048最相近,但存在編碼區(qū)(CDS)nt 1074 AG同義突變,位于第8外顯子的第337密碼子由CAA變成CAG,其序列提交國(guó)際Gen Bank(序列號(hào):KU529269)和IPD-KIR Database(IWS40002178),已被世界衛(wèi)生組織(WHO)HLA因子命名委員會(huì)KIR分委會(huì)正式命名為KIR3DL3*04802,該新等位基因在306名南方漢族無(wú)關(guān)個(gè)體中共檢出12次,檢出頻率為3.92%。結(jié)論成功建立KIR3DL3基因c DNA分子克隆測(cè)序方法,在等位基因水平的KIR研究中具有良好的應(yīng)用前景。
[Abstract]:Objective to establish a molecular cloning and sequencing method of KIR3DL3 gene and identify a new KIR3DL3 allele in southern Han population. Methods A sample with abnormal sequencing results of KIR3DL3 gene was collected, mRNAs were extracted from fresh peripheral blood samples of EDTA anticoagulant, then reverse transcribed into c DNA. All coding region sequences were amplified by PCR with a pair of KIR3DL3 gene specific PCR primers. The amplified products were recovered and purified by gel, then cloned and sequenced by haplotype. Results by molecular cloning and sequencing, a normal KIR3DL3p01002 allele and a new variant KIR3DL3 allele were detected. The sequence of the new allele was the most similar to that of KIR3DL3p048, but there was a synonymous mutation in the coding region of CDSNT 1074 AG. Codon 337, located at exon 8, changed from CAA to CAG.The sequence was submitted to Gen Bankinternational (serial number: KU529269) and IPD-KIR Database / IWS400021780.It has been officially named KIR subcommittee of WHO WHO HLA naming Committee for HLA factors KIR3DL3C04802. The new allele is located in 306 South China. A total of 12 cases were detected in unrelated individuals of the Fang Han nationality. The detection frequency was 3.92%. Conclusion the method of cDNA cloning and sequencing of KIR3DL3 gene has been successfully established and has a good prospect in allelic KIR studies.
【作者單位】: 深圳市血液中心;大連醫(yī)科大學(xué);
【基金】:國(guó)家自然科學(xué)基金(81373158)
【分類號(hào)】:R440
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本文編號(hào):2035109
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